5wjq_D : 3D-footprint complex

structure name	MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA (Zinc finger protein 568)
reference	Patel et al. Cell 173 221 2018
source	Mus musculus
experiment	X-ray (resolution=2.79, R-factor=0.196)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5v3j_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5wjq_D interface=45,47,48,51,73,74,75,101,103,107,128,129,131,132,135,157,160,163,185,187,188,191,213,216,241,243,244,247,269,272,275, gsekpykcqecgkafpsnaqlslhhrvhtdekcfeckecgkafmRpSHllRhqrihtgekphkckecgkafrYDTqlslhllthagarrfeckdcdkvysCaSqlaLhqmshtgekphkckecgkgfISdSHllRhqsvhtgetpykckecgkgfrRgsElaRhqrahsgdkpykckecgksftCtTElfRhqkvhtgdrphkckecgkafiRrsElthhershsgekpyeckecgktfgRgSElsRhqkihtgekpykcqqcgkafiRgsHltQhqriht
interface signature	RSHRYDTCSLISSHRRERCTERRERSERRHQ

Estimated binding specificities ?

readout + contact

# IC=25.541 IC/col=1.064 n_of_columns=24

specificity:

A |   0   0   0   0  10  24   0   6  96   0   0   0   0  17   0   0   0  96   0   3  59   0   0  87
C |  96  96  96   0  10  24   0  12   0  96  96  46   0   7   0  96  96   0  96   2  29  96  96   5
G |   0   0   0   0  15  24   0  10   0   0   0   1  96   6  96   0   0   0   0  87   4   0   0   2
T |   0   0   0  96  61  24  96  68   0   0   0  49   0  66   0   0   0   0   0   4   4   0   0   2

scan!

home
updated Tue Dec 17 02:45:09 2024