5wjq_D : 3D-footprint complex

structure name	MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA (Zinc finger protein 568)
reference	Patel et al. Cell 173 221 2018
source	Mus musculus
experiment	X-ray (resolution=2.79, R-factor=0.196)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5v3j_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5wjq_D interface=45,47,48,51,73,74,75,101,103,107,128,129,131,132,135,157,160,163,185,187,188,191,213,216,241,243,244,247,269,272,275, gsekpykcqecgkafpsnaqlslhhrvhtdekcfeckecgkafmRpSHllRhqrihtgekphkckecgkafrYDTqlslhllthagarrfeckdcdkvysCaSqlaLhqmshtgekphkckecgkgfISdSHllRhqsvhtgetpykckecgkgfrRgsElaRhqrahsgdkpykckecgksftCtTElfRhqkvhtgdrphkckecgkafiRrsElthhershsgekpyeckecgktfgRgSElsRhqkihtgekpykcqqcgkafiRgsHltQhqriht
interface signature	RSHRYDTCSLISSHRRERCTERRERSERRHQ

Estimated binding specificities ?

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# IC=25.598 IC/col=1.067 n_of_columns=24

specificity:

A |   0   0   0   0  12  24   0   8  96   0   0   1   0  12   0   0   0  96   0   4  73   0   0  85
C |  96  96  96   0  20  24   0  10   0  96  96  39   0   8   0  96  96   0  96   2  13  96  96   4
G |   0   0   0   0   8  24   0   6   0   0   0   0  96  12  96   0   0   0   0  87   2   0   0   2
T |   0   0   0  96  56  24  96  72   0   0   0  56   0  64   0   0   0   0   0   3   8   0   0   5

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updated Thu Sep 12 22:13:53 2024