interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'RED14' DNA SEQUENCE
(HOMEOBOX PROTEIN ABDOMINAL-B)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.44, R-factor=0.226)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes5zjq_AB 5zjr_AB 5zjs_AB
reference complex5zjt_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM

Estimated binding specificities ?

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# IC=6.476 IC/col=0.925 n_of_columns=7 specificity:   
A |  16   1   0  96   0  13  75
C |   6   6   0   0   0  20   0
G |   6   0   0   0   0  54  13
T |  68  89  96   0  96   9   8
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updated Sun Jun 28 14:45:33 2026