interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'RED14' DNA SEQUENCE
(HOMEOBOX PROTEIN ABDOMINAL-B)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.44, R-factor=0.226)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM

Estimated binding specificities ?

readout + contactlogo
# IC=6.418 IC/col=0.917 n_of_columns=7 specificity:   
A |   8   8  96   0  83  96  76
C |   6  57   0   0   7   0   8
G |   6  19   0   0   0   0   6
T |  76  12   0  96   6   0   6
scan!

home
updated Tue Dec 17 03:12:54 2024