interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLUE14' DNA SEQUENCE
(HOMEOBOX PROTEIN ABDOMINAL-B)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.90, R-factor=0.255)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM

Estimated binding specificities ?

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# IC=6.139 IC/col=0.877 n_of_columns=7 specificity:   
A |  20   5  50   0   5  96  96
C |   5  80  10   0   5   0   0
G |   5   5  15   0   6   0   0
T |  66   6  21  96  80   0   0
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updated Tue Dec 17 03:13:04 2024