interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLUE14' DNA SEQUENCE
(HOMEOBOX PROTEIN ABDOMINAL-B)
referenceBaburajendran et al. 'Cell 24 2221 2018
sourceDROSOPHILA MELANOGASTER
experimentX-ray (resolution=2.90, R-factor=0.255)
structural superfamilyHomeodomain-like;
sequence familyHomeobox domain;
multimeric complexes5zjq_AB 5zjr_AB 5zjs_AB
reference complex5zjt_E
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNM

Estimated binding specificities ?

contactlogo
# IC=5.865 IC/col=0.838 n_of_columns=7 specificity:   
A |   6   0  82  96  15   4  69
C |   4   0   4   0   8   6   4
G |   4   0   6   0  17  82   4
T |  82  96   4   0  56   4  19
scan!

home
updated Fri Jan 9 05:17:13 2026