6pwe_G : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	2nqb_ABCDEFGH 2pyo_ABCDEFGH 4qlc_ABCDEFGHU 4x23_ABCDEFG 4x23_KLMNOPQ 5wcu_ABCDEFGHU 5wcu_KLMNOPQRV 6dzt_ABCDEFGH 6pwe_ABCDEFGH 6pwf_ABCDEFGHK 8pp6_ABCDEFGH 8pp7_ABCDEFGH 8ux1_ABCDEFGH
redundant complexes	6dzt_C 6pwf_C 2nqb 2pyo 4qlc 4x23 5wcu 7xyf 7xyg 8pp6 8pp7 8ux1
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pwe_G interface=3,28, ksRsnraglqfpvgrihrllrkgnyaeRvgagapvylaavmeylaaevlelagnaardnkktriiprhlqlairndeelnkllsgvtiaqggvlpniqavllp

  
  --RT         +------------------------8u14_G    
               ! 
  --RC       +-4                    +---6qld_f    
             ! !             +------2 
  --RA       ! !             !      !   +7xsx_a    
             ! +-------------3      +---1 
  LARG     --5               !          +7unc_a    
             !               ! 
  LC--       !               +----------8bvw_e    
             ! 
  --RG       +-------------------------8txv_G

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updated Fri Sep 13 22:59:21 2024