6pwe_G : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	2nqb_ABCDEFGH 2pyo_ABCDEFGH 4qlc_ABCDEFGHU 4x23_ABCDEFG 4x23_KLMNOPQ 5wcu_ABCDEFGHU 5wcu_KLMNOPQRV 6dzt_ABCDEFGH 6pwe_ABCDEFGH 6pwf_ABCDEFGHK 8pp6_ABCDEFGH 8pp7_ABCDEFGH 8ux1_ABCDEFGH
redundant complexes	6dzt_C 6pwf_C 2nqb 2pyo 4qlc 4x23 5wcu 7xyf 7xyg 8pp6 8pp7 8ux1
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pwe_G interface=3,28, ksRsnraglqfpvgrihrllrkgnyaeRvgagapvylaavmeylaaevlelagnaardnkktriiprhlqlairndeelnkllsgvtiaqggvlpniqavllp

  
  --RA----                                 +1zla_C    
                            +--------------4 
  --RA--RA                  !              +6a5l_g    
                            ! 
  --RT----                +-9                +8u14_G    
                          ! ! +--------------1 
  --RG----                ! ! !              +5x0y_G    
                          ! +-8 
  --RG----       +-------10   !              +8txv_G    
                 !        !   +--------------2 
  --RG----       !        !                  +8ox0_C    
                 !        !  
  --RG----       !        +--------------8jla_C    
                 !  
  --RC----       !                    +---6qld_f    
               -13            +-------6 
  ----RA--       !            !       !  +6g0l_D    
                 !            !       +--5 
  LC------       !     +------7          +8bvw_e    
                 !     !      ! 
  --RA----       !     !      !           +7xsx_a    
                 !  +-11      +-----------3 
  --RT----       !  !  !                  +8grq_A    
                 +-12  !  
  LARG----          !  +------------------7unc_a    
                    !  
  LCRT----          +--------------------8hr1_E

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updated Wed Dec 18 04:59:34 2024