Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes2nqb_ABCDEFGH 2pyo_ABCDEFGH 4qlc_ABCDEFGHU 6dzt_ABCDEFGH 6pwe_ABCDEFGH 6pwf_ABCDEFGHK 8pp6_ABCDEFGH 8pp7_ABCDEFGH 8ux1_ABCDEFGH
redundant complexes4qlc_D 8pp6_D 8pp7_H 8ux1_H 2nqb 2pyo 6dzt 6pwf 7xyg
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--                                 +6g0l_D    
                        +------------------1 
  --RC----          +--10                  +6qld_f    
                    !   !  
  --RG----          !   +------------------8jla_C    
                 +-11  
  --RT----       !  !      +---------------8u14_G    
                 !  !      ! 
  --RA----       !  !      !                 +7xsx_a    
                 !  +------8               +-2 
  --RG----       !         !    +----------3 +7unc_a    
                 !         !    !          ! 
  --RT----       !         +----6          +8grq_A    
               -13              ! 
  --RT----       !              +----------8hr1_E    
                 !  
  RT------       !                      +----9fgq_D    
                 !         +------------5 
  --RG----       !  +------9            +----5x0y_G    
                 !  !      ! 
  --RG----       !  !      +-----------------8ox0_C    
                 +-12  
  --RA----          !         +--------------1zla_C    
                    +---------7 
  --RG----                    !              +8txv_G    
                              +--------------4 
  --RA--RA                                   +6a5l_g

home
updated Wed Dec 18 05:00:52 2024