structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF M. POLYMORPHA AUXIN RESPONSE FACTOR 2 (MPARF2) IN COMPLEX WITH HIGH AFFINITY DNA (Auxin response factor) |
reference | Weijers et al. |
source | Marchantia polymorpha |
experiment | X-ray (resolution=2.96, R-factor=0.218) |
structural superfamily | DNA-binding pseudobarrel domain; |
sequence family | Auxin response factor; B3 DNA binding domain; |
multimeric complexes | 6sdg_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | SHSRPR |
Estimated binding specificities ?
readout + contact |
A | 21 0 0 0 21 0 0 0 C | 21 0 0 0 44 0 0 96 G | 21 0 96 0 21 96 96 0 T | 33 96 0 96 10 0 0 0scan! |
Dendrogram of similar interfaces ?
matrix format--STHG--ST----RC----PT--RG-------- L +6sdg_B +----------------1 --STHG--------RG----PT--RG-------- L +---2 +6ycq_A ! ! --STITRGVTWC--NCNG------MA-------- L +-----3 +-----------------5yzz_C ! ! KASTLTRGIT----WC--NTNT----MA------ L --4 +---------------------6j9b_A ! ------YCWC--ET----NGNGFA----DCRGRC L +---------------------------3zi5_A |
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updated Tue Dec 19 14:47:10 2023