7el3_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII (Homoprotocatechuate degradation operon regulator HpaR)
reference	Permsirivisarn et al. 'Febs 289 3217 2022
source	Acinetobacter baumannii
experiment	X-ray (resolution=1.70, R-factor=0.166)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	MarR family;
multimeric complexes	7el3_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7el3_B interface=47,56,57,58,59,61,66,83, psltlalleareaimshfrpalnevglteqqwriirilyqyeelesNqlaelaciLKPSlTgilnRmveqkliqkrkdyddqRislisltesglecfktqavkmeasyqkiqeqygeekmkqllellkdlskikl
interface signature	NLKPSTRR

Estimated binding specificities ?

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# IC=4.663 IC/col=0.666 n_of_columns=7

specificity:

A |   5  80  80   0  24  81  80
C |   5   6   5  85  24   5   5
G |   5   5   5   5  24   5   5
T |  81   5   6   6  24   5   6

scan!

Dendrogram of similar interfaces ?

matrix format

  
  VT--HTPTSA--TTKG----YT   L       +-----------------------------9c4c_G    
                                 +-1 
  --ET--RGTCTGSTRG--KT--   L   +-2 +-----------------------------6q2b_B    
                               ! ! 
  ------RGTCTA--RGNTRT--   L --3 +-----------------------------4fx4_B    
                               ! 
  ----ITRGECSCSGKG------   L   +-----------------------------5i2d_R

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updated Wed Dec 18 08:59:15 2024