7el3_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII (Homoprotocatechuate degradation operon regulator HpaR)
reference	Permsirivisarn et al. 'Febs 289 3217 2022
source	Acinetobacter baumannii
experiment	X-ray (resolution=1.70, R-factor=0.166)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	MarR family;
multimeric complexes	7el3_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7el3_B interface=47,56,57,58,59,61,66,83, psltlalleareaimshfrpalnevglteqqwriirilyqyeelesNqlaelaciLKPSlTgilnRmveqkliqkrkdyddqRislisltesglecfktqavkmeasyqkiqeqygeekmkqllellkdlskikl
interface signature	NLKPSTRR

Estimated binding specificities ?

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# IC=4.701 IC/col=0.672 n_of_columns=7

specificity:

A |   7  79  79   1  24  79  81
C |   5   5   5  90  24   5   5
G |   5   5   5   0  24   5   5
T |  79   7   7   5  24   7   5

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --ET--RGTCTGSTRG----KT--   L                                   +6q2b_B    
                                                  +--------------1 
  VT--HTPTSA--TTKG------YT   L     +--------------2              +9c4c_G    
                                   !              ! 
  --------------RC--YG----       +-3              +--------------2acj_B    
                                 ! ! 
  ------RGTCTA--RGNT--RT--   L --4 +-----------------------------4fx4_B    
                                 ! 
  ----ITRGECSCSGKG--------   L   +-----------------------------5i2d_R

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updated Sat Jan 10 15:08:16 2026