interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII
(Homoprotocatechuate degradation operon regulator HpaR)
referencePermsirivisarn et al. 'Febs 289 3217 2022
sourceAcinetobacter baumannii
experimentX-ray (resolution=1.70, R-factor=0.166)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyMarR family;
multimeric complexes7el3_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNLKPSTRR

Estimated binding specificities ?

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# IC=4.636 IC/col=0.662 n_of_columns=7 specificity:   
A |   5  80  80   0  24  80  80
C |   5   5   5  85  24   6   6
G |   5   5   6   6  24   5   5
T |  81   6   5   5  24   5   5
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --DCLT--AGTTRGRG--RA   L     +-----------------------------5h3r_A    
                             +-2 
  STSTQAQGSTSART--KT--   L   ! !       +---------------------5trd_B    
                           --3 +-------1 
  --ST----TC--QGRG----       !         +---------------------7b24_C    
                             ! 
  --ITRGECSCSGKG------   L   +-----------------------------5i2d_R    
                           

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updated Sat Sep 14 02:32:32 2024