interface graph thumbnail
legend  pdf

structure nameTHE COMPLEX OF DNA WITH THE C-TERMINAL DOMAIN OF TYE7 FROM SACCHAROMYCES CEREVISIAE.
(Serine-rich protein TYE7)
reference'Acta 77 341 2021
sourceSaccharomyces cerevisiae (strain ATCC 204508 / S288c) / Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
experimentX-ray (resolution=2.55, R-factor=0.248)
structural superfamilyHLH, helix-loop-helix DNA-binding domain;
sequence familyHelixloophelix DNAbinding domain;
multimeric complexes7f2f_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHNIEYR

Estimated binding specificities ?

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# IC=3.292 IC/col=0.658 n_of_columns=5 specificity:   
A |   9   0  96  24  15
C |   9  96   0  24  15
G |   9   0   0  24  49
T |  69   0   0  24  17
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --HGNTLCEC----RCRG----   L                              +------1hlo_B    
                                   +----------------------1 
  --HGSTITET----RCRG----   L     +-2                      +------4h10_A    
                                 ! ! 
  ------NT--RAEC----RC--       +-3 +-----------------------------2ypa_B    
                               ! ! 
  RT----NT--RGEC----RCQT     --4 +-----------------------------2ypa_A    
                               ! 
  --ST----AT----RTRG----       +-----------------------------5sy7_B    
                             

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updated Sat Sep 14 02:33:32 2024