7f2f_B : 3D-footprint complex

structure name	THE COMPLEX OF DNA WITH THE C-TERMINAL DOMAIN OF TYE7 FROM SACCHAROMYCES CEREVISIAE. (Serine-rich protein TYE7)
reference	'Acta 77 341 2021
source	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) / Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
experiment	X-ray (resolution=2.55, R-factor=0.248)
structural superfamily	HLH, helix-loop-helix DNA-binding domain;
sequence family	Helixloophelix DNAbinding domain;
multimeric complexes	7f2f_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7f2f_B interface=9,10,12,13,16,17, ltpfqkqaHNkIEkrYRinintkiarlqqiipwvaseqtafevgstklnksmilekavdyilylqnnerlyemevqrlkseidtlkqdqklehh
interface signature	HNIEYR

Estimated binding specificities ?

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# IC=3.253 IC/col=0.651 n_of_columns=5

specificity:

A |  15  24   0   0  67
C |  49  24   0   0   9
G |  15  24   0  96   9
T |  17  24  96   0  11

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Dendrogram of similar interfaces ?

matrix format

  
  --HGNTLCEC----RCRG----   L                              +------1hlo_B    
                                   +----------------------1 
  --HGSTITET----RCRG----   L     +-2                      +------4h10_A    
                                 ! ! 
  ------NT--RAEC----RC--       +-3 +-----------------------------2ypa_B    
                               ! ! 
  RT----NT--RGEC----RCQT     --4 +-----------------------------2ypa_A    
                               ! 
  --ST----AT----RTRG----       +-----------------------------5sy7_B

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updated Wed Dec 18 09:01:09 2024