structure name | INTERMOLECULAR RECOGNITION REVEALED BY THE COMPLEX STRUCTURE OF HUMAN CLOCK-BMAL1 BASIC HELIX-LOOP-HELIX DOMAINS WITH E-BOX DNA (ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR-LIKE PROTEIN...) |
reference | Su et al. 'Cell 23 213 2013 |
source | HOMO SAPIENS |
experiment | X-ray (resolution=2.40, R-factor=0.198) |
structural superfamily | HLH, helix-loop-helix DNA-binding domain; |
sequence family | Helixloophelix DNAbinding domain; |
multimeric complexes | 4h10_AB |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | HSIERR |
Estimated binding specificities ?
readout + contact |
A | 13 13 0 0 96 C | 54 13 0 0 0 G | 13 57 0 96 0 T | 16 13 96 0 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ARNT-like 1 | ||
CATGTGA | PubMed | 4h10_A(1.02e-03), 4h10_AB(1.50e-07) |
AACGTGA | PubMed | 4h10_A(7.33e-07), 4h10_AB(3.32e-08) |
term: BMAL1 | ||
CACGTG | PubMed | 4h10_A(3.65e-04), 4h10_AB(1.18e-09) |
GGCACGAGGC | PubMed | 4h10_A(4.16e-03), 4h10_AB(1.89e-03) |
CATGTGA | PubMed | 4h10_A(1.02e-03), 4h10_AB(1.50e-07) |
AACGTGA | PubMed | 4h10_A(7.33e-07), 4h10_AB(3.32e-08) |
Dendrogram of similar interfaces ?
matrix format------HGNT--ECRCRG L +----------------7d8t_A +------------1 ------HGNTMTEARCRG +-2 +----------------1nlw_D ! ! ------HG----ETRTRG +-3 +-----------------------------5v0l_A ! ! ------HG----ECRGRG L --4 +-----------------------------4zpk_A ! NTNGRTECRGRC------ L +-----------------------------6od3_F |
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updated Fri Sep 13 18:18:45 2024