7f9h_B : 3D-footprint complex

structure name	COMPLEX STRUCTURE OF ENRR-DNA (EnrR repressor)
reference	Wang et al. 'Nucleic 50 3777 2022
source	Edwardsiella piscicida
experiment	X-ray (resolution=1.78, R-factor=0.202)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	7f9h_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7f9h_B interface=7,33,37,40,41,43, saqdwhRadivaalhkrgitlaglsrahglaaRtlsNamERhYpraerliaqaldmrpediwpqryrn
interface signature	RRNERY

Estimated binding specificities ?

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# IC=4.434 IC/col=0.739 n_of_columns=6

specificity:

A |  13  24   0  54   0  96
C |  16  24   0  16   0   0
G |  13  24   0  13   0   0
T |  54  24  96  13  96   0

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Dendrogram of similar interfaces ?

matrix format

  
  RT--------RG----NT--ETRTYA   L                      +---7f9h_B    
                                   +------------------2 
  --QT--STNTVTATSTQTETTT----   L   !                  ! +--2r1j_L    
                                 --3                  +-1 
  ----AT--QAAT--SA----------       !                    +--4z5h_A    
                                   ! 
  --------QASTCTSART--ET----   L   +----------------------5j2y_A

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updated Sat Sep 14 02:33:44 2024