7pza_B : 3D-footprint complex

structure name	STRUCTURE OF THE CLR-CAMP-DNA COMPLEX (Putative cAMP-binding protein-catabolite gene activator)
reference	Essen et al. 'To ? ? ?
source	Sinorhizobium meliloti 1021
experiment	X-ray (resolution=2.72, R-factor=0.272)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence family	Cyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
redundant complexes	7pzb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pza_B interface=189,190,191,192,194, rssafwrsfpifeefdsetlcelsgiasyrkwsagtvifqrgdqgdymivvvsgriklslftpqgrelmlrqheagalfgemalldgqprsadatavtaaegyvigkkdflalitqrpktaeavirflcaqlrdttdrletialydlnarvarfflatlrqihgsempqsanlrltlsqtdiasilgaSRPKvNrailsleesgaikradgiiccnvgrllsiadp
interface signature	SRPKN

Estimated binding specificities ?

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# IC=6.185 IC/col=1.031 n_of_columns=6

specificity:

A |   0   0  38  96   1  96
C |   0   0  19   0  76   0
G |  96   0  20   0   0   0
T |   0  96  19   0  19   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KTQTSTRTETTA--RA------   L                                +--3iyd_H    
                                 +--------------------------1 
  ----ITRGECSCSGKG------   L   +-2                          +--5i2d_R    
                               ! ! 
  ------RTRGTT------KT--   L --3 +-----------------------------2o8k_A    
                               ! 
  --------DCKT--RGSTRGYC   L   +-----------------------------4uno_A

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updated Wed Dec 18 10:59:47 2024