7pza_B : 3D-footprint complex

structure name	STRUCTURE OF THE CLR-CAMP-DNA COMPLEX (Putative cAMP-binding protein-catabolite gene activator)
reference	Essen et al. 'To ? ? ?
source	Sinorhizobium meliloti 1021
experiment	X-ray (resolution=2.72, R-factor=0.272)
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence family	Cyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
redundant complexes	7pzb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pza_B interface=189,190,191,192,194, rssafwrsfpifeefdsetlcelsgiasyrkwsagtvifqrgdqgdymivvvsgriklslftpqgrelmlrqheagalfgemalldgqprsadatavtaaegyvigkkdflalitqrpktaeavirflcaqlrdttdrletialydlnarvarfflatlrqihgsempqsanlrltlsqtdiasilgaSRPKvNrailsleesgaikradgiiccnvgrllsiadp
interface signature	SRPKN

Estimated binding specificities ?

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# IC=1.927 IC/col=0.321 n_of_columns=6

specificity:

A |  12  16  12  20  66   6
C |  12  14  12  20  10  78
G |  12  52  12  22  10   6
T |  60  14  60  34  10   6

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KTQTSTRTETTA--RA------   L                                +--3iyd_H    
                                 +--------------------------1 
  ----ITRGECSCSGKG------   L   +-2                          +--5i2d_R    
                               ! ! 
  ------RTRGTT------KT--   L --3 +-----------------------------2o8k_A    
                               ! 
  --------DCKT--RGSTRGYC   L   +-----------------------------4uno_A

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updated Tue Dec 19 20:22:27 2023