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legend  pdf

structure nameTHE CRYSTAL STRUCTURE OF HUMAN FORKHEAD BOX PROTEIN A IN COMPLEX WITH DNA 2
(Hepatocyte nuclear factor 3-alpha)
referenceYoon et al. 'Nucleic 50 8929 2022
sourceHomo sapiens
experimentX-ray (resolution=2.10, R-factor=0.187)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyFork head domain;
multimeric complexes7vox_CH
redundant complexes1vtn_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNSRHSFK

Estimated binding specificities ?

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# IC=4.039 IC/col=0.673 n_of_columns=6 specificity:   
A |  10  74  96  96  24  64
C |  12   2   0   0  24  10
G |  10  10   0   0  24  12
T |  64  10   0   0  24  10
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------------QTNAST--RGHTNTSTLART--   L           +-----------------------------2hdc_A    
                                                 +-2 
  --YCKT--STQT--YTPT--------------LG   L       +-3 +-----------------------------5x11_A    
                                               ! ! 
  FG--TTPTRTAT----LT----------------   L     +-4 +-----------------------------4hqe_A    
                                             ! ! 
  --------------RTNT--RGST--NGRT----   L   +-5 +-----------------------------2pi0_B    
                                           ! ! 
  ----------KT----RGAT--RGYA--------   L   ! !                            +1bc8_C    
                                         --6 +----------------------------1 
  ----------KT----RGAT--RGNT--------   L   !                              +1pue_E    
                                           ! 
  ------RC--------YC----------------   L   +-----------------------------7cc9_A    
                                         

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updated Tue Dec 19 23:05:48 2023