| structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF FOXO4 BOUND TO DNA (Forkhead box protein O4) |
| reference | Obsilova et al. 'Acta 66 1351 2010 |
| source | Homo sapiens |
| experiment | X-ray (resolution=1.87, R-factor=0.195) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Fork head domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SNSRHS |
Estimated binding specificities ?
| readout + contact |  |
A | 6 0 90 96 76 8 76 C | 70 0 0 0 6 76 6 G | 8 0 6 0 6 6 6 T | 12 96 0 0 8 6 8scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: FOXO4 | ||
| TTGTTTAC | PubMed | 3l2c_A(1.35e-11) |
Dendrogram of similar interfaces ?
matrix format------ST------NASTRTHT--ST------ L +---3l2c_A +-----1 --------------NASTRGHT--STLT---- L +------2 +---7cby_C ! ! ------------RTSTHG------------RA L +---3 +---------3zpl_B ! ! RT--LA--HGTTETYTRG-------------- L --4 +----------------1f4k_B ! --TT------KATTQTTG--LTRT----KA-- L +--------------------2p7c_B |
home
updated Fri Sep 13 17:23:25 2024