interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF NF-KB P52 HOMODIMER BOUND TO +1/-1 SWAP P-SELECTIN KB DNA FRAGMENT
(Nuclear factor NF-kappa-B p52 subunit)
referenceMeshcheryakov et al. 'To ? ? ?
sourceHomo sapiens
experimentX-ray (resolution=3.40, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
sequence familyRel homology domain RHD; IPT/TIG domain;
multimeric complexes7cli_AB 7vup_AB 7vuq_AB 7w7l_AB
reference complex7cli_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCESHK

Estimated binding specificities ?

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# IC=4.434 IC/col=0.887 n_of_columns=5 specificity:   
A |  13  16   0   0   0
C |  16  54  96  96  96
G |  13  13   0   0   0
T |  54  13   0   0   0
scan!

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updated Fri Sep 13 08:19:32 2024