7z5k_B : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR MYF5 BOUND TO NON-SYMMETRICAL SITE (Myogenic factor 5)
reference	Morgunova et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.28, R-factor=0.231)
structural superfamily	HLH, helix-loop-helix DNA-binding domain;
sequence family	Helixloophelix DNAbinding domain;
multimeric complexes	7z5i_AB 7z5k_AB
redundant complexes	7z5i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7z5k_B interface=4,8,10,11,14, mdrRkaaTmRErrRlkkvnqafetlkrctttnpnqrlpkveilrnairyieslqel
interface signature	RTRER

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5

specificity:

A |   9  11  11   0  96
C |  67   9   9  96   0
G |   9  67   9   0   0
T |  11   9  67   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----NT----ET----RCMT------             +-----------------------------2ql2_D    
                                       +-1 
  ------HG----ITEC----RCRG--   L     +-2 +-----------------------------5nj8_D    
                                     ! ! 
  NTNGRTECRG--RC------------   L   +-3 +-----------------------------6od3_F    
                                   ! ! 
  ------HT----STEC----RTRGRT   L --4 +-----------------------------7xq5_A    
                                   ! 
  ------HGNT------------RG--   L   +-----------------------------6g1l_A

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updated Wed Dec 18 14:51:43 2024