interface graph thumbnail
legend  pdf

structure nameCRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C2 SYMMETRY.
experimentNMR
structural superfamilyPLP-dependent transferases;"Winged helix" DNA-binding domain;
sequence familyBacterial regulatory proteins, gntR family;
multimeric complexes7zla_AB 7zn5_AB 7zpa_AB 7zth_AB
reference complex7zla_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRSQNER

Estimated binding specificities ?

contactlogo
# IC=3.968 IC/col=0.567 n_of_columns=7 specificity:   
A |  67   9  24  24   0   9   0
C |   9  11  24  24   0   9   0
G |  11   9  24  24  96  67   0
T |   9  67  24  24   0  11  96
scan!

home
updated Sat Aug 2 22:38:41 2025