8dfb_B : 3D-footprint complex

structure name	STRUCTURE OF M. KANDLERI TOPOISOMERASE V IN COMPLEX WITH DNA. 39 BASE PAIR SYMMETRIC DNA COMPLEX (Topoisomerase V)
reference	Mondragon et al. Elife 11 ? 2022
source	Methanopyrus kandleri
experiment	X-ray (resolution=3.17, R-factor=0.220)
structural superfamily	Topoisomerase V catalytic domain-like;RuvA domain 2-like;
sequence family	Helixhairpinhelix motif;
multimeric complexes	8df7_AB 8df8_AB 8dfb_AB
reference complex	8df8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dfb_B interface=285,286,287,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimRRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgykTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag
interface signature	RRYTD

Estimated binding specificities ?

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# IC=6.322 IC/col=0.316 n_of_columns=20

specificity:

A |   0   1   7  79   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  18
C |   0   5  79   5  96   5  24  24  24  24  24  24  24  24  24  24  24  24  24  11
G |   0  90   5   5   0  81  24  24  24  24  24  24  24  24  24  24  24  24  24   5
T |  96   0   5   7   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  62

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updated Tue Dec 19 02:42:48 2023