8dfb_B : 3D-footprint complex

structure name	STRUCTURE OF M. KANDLERI TOPOISOMERASE V IN COMPLEX WITH DNA. 39 BASE PAIR SYMMETRIC DNA COMPLEX (Topoisomerase V)
reference	Mondragon et al. Elife 11 ? 2022
source	Methanopyrus kandleri
experiment	X-ray (resolution=3.17, R-factor=0.220)
structural superfamily	Topoisomerase V catalytic domain-like;RuvA domain 2-like;
sequence family	Helixhairpinhelix motif;
multimeric complexes	8df7_AB 8df8_AB 8dfb_AB
reference complex	8df8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dfb_B interface=285,286,287,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimRRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgykTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag
interface signature	RRYTD

Estimated binding specificities ?

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# IC=6.376 IC/col=0.319 n_of_columns=20

specificity:

A |   0   6   0  90   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24   6
C |   0   6  84   0  96   6  24  24  24  24  24  24  24  24  24  24  24  24  24  18
G |   0  78   6   0   0  78  24  24  24  24  24  24  24  24  24  24  24  24  24  12
T |  96   6   6   6   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24  60

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updated Tue Dec 17 16:06:39 2024