8eb5_A : 3D-footprint complex

structure name	TANDEM OF HERMES TRANSPOSASE BED DOMAIN IN COMPLEX WITH THE QUASI PALINDROME OF ITS TRANSPOSON LEFT-END (Hermes transposase BED domain)
reference	Lannes et al. 'Nat 14 4470 2023
source	Musca domestica
experiment	X-ray (resolution=2.50, R-factor=0.232)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	BED zinc finger;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8eb5_A interface=60,61,63,67, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQtSnlcRhkccasl
interface signature	RQSR

Estimated binding specificities ?

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# IC=4.318 IC/col=0.254 n_of_columns=17

specificity:

A |  24  24  24  24  24  24  24   0   0  21   0  12  24  24  24  24  24
C |  24  24  24  24  24  24  24   0   0  21  96  12  24  24  24  24  24
G |  24  24  24  24  24  24  24   0  96  31   0  12  24  24  24  24  24
T |  24  24  24  24  24  24  24  96   0  23   0  60  24  24  24  24  24

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updated Wed Dec 20 02:20:16 2023