structure nameTANDEM OF HERMES TRANSPOSASE BED DOMAIN IN COMPLEX WITH THE QUASI PALINDROME OF ITS TRANSPOSON LEFT-END
(Hermes transposase BED domain)
referenceLannes et al. 'Nat 14 4470 2023
sourceMusca domestica
experimentX-ray (resolution=2.50, R-factor=0.232)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyBED zinc finger;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRQSR

Estimated binding specificities ?

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# IC=4.318 IC/col=0.864 n_of_columns=5 specificity:   
A |   0   0  21   0  12
C |   0   0  21  96  12
G |   0  96  31   0  12
T |  96   0  23   0  60
scan!

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updated Sat Sep 14 09:49:46 2024