1ga5_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT (ORPHAN NUCLEAR RECEPTOR NR1D1)
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=0.236)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ga5_B interface=15,22,25,29,30,77, vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr
interface signature	HEKRRF

Estimated binding specificities ?

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# IC=5.712 IC/col=0.635 n_of_columns=9

specificity:

A |   3   0  66   3   0  18  24  24  16
C |   3   0  23  92  96  13  24  24  11
G |   4  96   3   0   0  13  24  24  13
T |  86   0   4   1   0  52  24  24  56

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updated Mon Dec 16 17:51:07 2024