1ga5_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT (ORPHAN NUCLEAR RECEPTOR NR1D1)
reference	Rastinejad et al.
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=0.236)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
multimeric complexes	1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
reference complex	1a6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ga5_B interface=15,22,25,29,30,77, vllckvcgdvasgfHygvlacEgcKgffRRsiqqniqykrclknencsivrinrnrcqqcrfkkclsvgmsrdavrFgr
interface signature	HEKRRF

Estimated binding specificities ?

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# IC=5.941 IC/col=0.660 n_of_columns=9

specificity:

A |   5   0  70   5   0  16  24  24  16
C |   6   0  16  90  96  10  24  24   6
G |   5  96   5   1   0   6  24  24   5
T |  80   0   5   0   0  64  24  24  69

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updated Thu Sep 12 14:41:11 2024