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structure nameCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
(ORPHAN NUCLEAR RECEPTOR NR1D1)
referenceRastinejad et al.
sourceHomo sapiens
experimentX-ray (resolution=2.40, R-factor=0.236)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
reference complex1a6y_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHEKRRF

Estimated binding specificities ?

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# IC=6.103 IC/col=0.678 n_of_columns=9 specificity:   
A |  78  24  24  70   0   1   8   0  78
C |   6  24  24   6   0   0   6  96   6
G |   6  24  24  12  96  89  12   0   6
T |   6  24  24   8   0   6  70   0   6
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updated Sat Aug 2 00:54:14 2025