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structure nameCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA- BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
(ORPHAN NUCLEAR RECEPTOR NR1D1)
referenceRastinejad et al.
sourceHomo sapiens
experimentX-ray (resolution=2.80, R-factor=0.260)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1a6y_AB 1ga5_AB 1ga5_EF 1hlz_AB
reference complex1a6y_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRFR

Estimated binding specificities ?

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# IC=8.247 IC/col=0.825 n_of_columns=10 specificity:   
A |  60  96  24  24  60   0   0   0   0  96
C |  12   0  24  24  12   0   0   0  96   0
G |  12   0  24  24  12  84  96   0   0   0
T |  12   0  24  24  12  12   0  96   0   0
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updated Thu Sep 12 14:43:32 2024