| structure name | THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI- DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR |
| experiment | NMR |
| structural superfamily | HMG-box; |
| sequence family | HMG high mobility group box; |
| redundant complexes | 1hry |
| reference complex | 1hry_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NFIRRSISY |
Estimated binding specificities ?
readout + contact |  |
A | 96 0 96 96 54 13 C | 0 96 0 0 13 54 G | 0 0 0 0 16 13 T | 0 0 0 0 13 16scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: SRY | ||
| AACAAT | PubMed | 1hrz_A(1.12e-03), 1hry_A(1.12e-03) |
| AACAAAG | PubMed | 1hrz_A(6.36e-06), 1hry_A(6.24e-06) |
| TCAAAG | PubMed | 1hrz_A(1.13e-03), 1hry_A(1.12e-03) |
| GAACAAT | PubMed | 1hrz_A(3.37e-03), 1hry_A(3.37e-03) |
| CTTTG | PubMed | 1hrz_A(3.59e-04), 1hry_A(3.54e-04) |
| ATTGTT | PubMed | 1hrz_A(1.12e-03), 1hry_A(1.12e-03) |
| NACAAT | PubMed | 1hrz_A(1.12e-03), 1hry_A(1.12e-03) |
| ACAAT | PubMed | 1hrz_A(3.54e-04), 1hry_A(3.54e-04) |
Dendrogram of similar interfaces ?
matrix formatRCNAFTIA--RG--NC----SA--LT----YA L +--------------------------2gzk_A ! RGNTFTMA--RT----RT--SA--------WA L --4 +------------7m5w_A ! +---------2 RCNTFTMA--RAHG------SA--------YA L ! ! +------------3f27_D +---3 RC--YTMALTRA----TG--AA----VCEC-- L ! +--------1qrv_A +-------------1 ----YA------------FT--SG-------- +--------5ze0_N |
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updated Thu Sep 12 14:43:37 2024