1id3_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS (HISTONE H2A.1)
reference	White et al. 'EMBO 20 5207 2001
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	1id3_ABCDEFGH 4jjn_ABCDEFGH 4kud_ABCDEFGH 6uph_ABCDEFGH 7e9c_ABCDEFGH 7e9f_ABCDEFGH 7k78_ABCDEFGH 7k7g_ABCDEFGHM 7on1_abcdefgh
reference complex	7e9c_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1id3_C interface=28, qsrsakagltfpvgrvhrllrrgnyaqRigsgapvyltavleylaaeilelagnaardnkktriiprhlqlairnddelnkllgnvtiaqggvlpnihqnllpkksakat

  
  ------RT                  +1id3_C    
                 +----------1 
  ------RA       !          +1f66_G    
               --3 
  AT------       !          +4g92_B    
                 +----------2 
  RAAANA--                  +1jfi_B

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updated Thu Jan 8 18:04:03 2026