structure name | 3D SOLUTION NMR STRUCTURE OF THE WILD TYPE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA (SEX-DETERMINING REGION Y PROTEIN) |
source | HOMO SAPIENS |
experiment | NMR |
structural superfamily | HMG-box; |
sequence family | HMG high mobility group box; |
redundant complexes | 1j47 |
reference complex | 1hry_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RNFIRNSSYP |
Estimated binding specificities ?
contact |
A | 7 96 7 73 73 96 0 C | 75 0 73 9 7 0 96 G | 7 0 9 7 7 0 0 T | 7 0 7 7 9 0 0scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: SRY | ||
AACAAT | PubMed | 1j46_A(3.38e-03), 1j47_A(1.12e-03) |
AACAAAG | PubMed | 1j46_A(5.19e-05), 1j47_A(6.37e-06) |
GAACAAT | PubMed | 1j46_A(1.05e-02), 1j47_A(3.38e-03) |
ACAAT | PubMed | 1j46_A(1.01e-03), 1j47_A(3.55e-04) |
GTTTGCACTTCGAAGCAGAG | PubMed | 1j46_A(7.47e-03), 1j47_A(7.92e-04) |
CTTTG | PubMed | 1j46_A(1.01e-03), 1j47_A(3.59e-04) |
ATTGTT | PubMed | 1j46_A(3.38e-03), 1j47_A(1.12e-03) |
TCAAAG | PubMed | 1j46_A(3.38e-03), 1j47_A(1.13e-03) |
NACAAT | PubMed | 1j46_A(3.38e-03), 1j47_A(1.12e-03) |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIA--RA--NASGSTYAPG-- L +--1j46_A +-------------1 KCNT--MAMA--EGSAACNT----YT L +----2 +--2lef_A ! ! RCNTFTMA--RAHGNT--SAYA---- L +-3 +----------------3f27_D ! ! ----YC--VT----FC--SA------ L --4 +---------------------1ckt_A ! --STYGLASGLA--TGTCIT------ L +-----------------------3tq6_B |
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updated Thu Sep 12 14:45:44 2024