structure name | LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR, 12 STRUCTURES (PROTEIN LYMPHOID ENHANCER-BINDING FACTOR) |
source | MUS MUSCULUS |
experiment | NMR |
structural superfamily | HMG-box; |
sequence family | HMG high mobility group box; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | KNMMESANYKRKK |
Estimated binding specificities ?
readout + contact |
A | 12 0 15 2 3 82 39 11 C | 60 3 10 20 3 5 22 11 G | 12 2 15 3 87 3 10 65 T | 12 91 56 71 3 6 25 9scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: LEF1 | ||
GTTTGAT | PubMed | 2lef_A(1.69e-04) |
Dendrogram of similar interfaces ?
matrix formatRTNGFTIA--RA--NASGST--YAPG L +-----------------------1j46_A ! RCNTFTMA--RAHGNT--SA--YA-- L ! +3f27_D +-----4 +-------1 RCNAFTIA--RG--NC--SALTYA-- L ! ! +------------2 +2gzk_A ! ! ! ! RGNTFTMA--RT--NGRTSA--WANT L +-5 +--3 +-------7m5w_A ! ! ! RCNTFTMA--RAHGNAACST------ L ! ! +--------------------4euw_A +-6 ! RCNGFTMA--RTHTNG--ST--YA-- L ! ! +-----------------------------6t90_L --7 ! --STYGLCSGLAKTTGTCIG------ ! +-----------------------------7lbx_A ! KASTYGLASGLA--TGTCIT------ L +-----------------------------3tmm_A |
home
updated Fri Sep 13 16:29:04 2024