| structure name | CRYSTAL STRUCTURE OF A TRAPPED REACTION INTERMEDIATE OF THE DNA REPAIR ENZYME ENDONUCLEASE VIII WITH BROMINATED-DNA (Endonuclease VIII) |
| reference | Fernandes et al. 'EMBO 21 789 2002 |
| source | Escherichia coli |
| experiment | X-ray (resolution=1.25, R-factor=?) |
| structural superfamily | N-terminal domain of MutM-like DNA repair proteins;S13-like H2TH domain;Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | FormamidopyrimidineDNA glycosylase H2; FormamidopyrimidineDNA glycosylase N; |
| redundant complexes | 1k3w_A 2ea0_A 2opf_A 2oq4_A 6fbu_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--QALGYA------------RG +-1k3x_A +----------2 RT--MG----RC--FC----RT L ! +-6tc9_A ! --RTMT----RC--------RT +---6 +---6fl1_A ! ! +-----3 --RA--------FT------RA ! ! ! ! +3gpu_A ! ! ! +---1 --RGMG------FC------RG L ! +--5 +3u6p_A --7 ! ----MG--ITRC--FG--HGRG L ! ! +------5itu_A ! +--4 ----MG--ITRC--FG----RG ! +------6lwd_G ! ----MG------RG--FG--RG +----------------3twm_A |
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updated Fri Sep 13 15:43:50 2024