interface graph thumbnail
legend  pdf

structure nameGLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX
(GLUCOCORTICOID RECEPTOR)
referenceGewirth et al. Nat.Struct.Biol. 2 386 1995
sourceRattus norvegicus
experimentX-ray (resolution=1.90, R-factor=?)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1lat_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKAR

Estimated binding specificities ?

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# IC=5.806 IC/col=0.968 n_of_columns=6 specificity:   
A |  12   0  48  96   0  96
C |  12   0  12   0  96   0
G |  60  96  12   0   0   0
T |  12   0  24   0   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GLUCOCORTICOID RECEPTOR
TGTTCTPubMed1lat_A(1.42e-06), 1lat_AB(8.15e-05)
GGTACANNNTGTTCTPubMed1lat_A(3.45e-04), 1lat_AB(6.68e-03)
TGTTCCPubMed1lat_A(7.45e-11), 1lat_AB(4.63e-07)
GCTGTTCTGCPubMed1lat_A(9.78e-05)
TGTTCANNNTGTTCTPubMed1lat_A(4.86e-04), 1lat_AB(6.68e-03)
AGAACANNNTGTTCTPubMed1lat_A(4.86e-04), 1lat_AB(6.68e-03)
GCAGAACAGCPubMed1lat_A(9.78e-05)
AGAACAPubMed1lat_A(1.42e-06), 1lat_AB(8.15e-05)

Dendrogram of similar interfaces ?

matrix format
  
  CAECKG--KGRG   L                          +----1cit_A    
                              +-------------4 
  --EAKG--KTRG   L            !             !    +4umm_A    
                              !             +----1 
  ----KGVG--RG   L            !                  +4tnt_B    
                       +------5 
  ----KGVT--RG   L     !      !                  +5emc_A    
                       !      !                +-2 
  --ECKGAGKGRG   L   +-6      +----------------3 +1hcq_E    
                     ! !                       ! 
  --ECKGAGKTRG   L   ! !                       +-4aa6_B    
                   --7 ! 
  ----KGVT--RG   L   ! +-------------------------2c7a_B    
                     ! 
  --ECKGAG--RG   L   +--------------------------4ond_A    
                   

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updated Mon Jun 29 14:23:31 2026