| structure name | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B (PROTEIN ORPHAN NUCLEAR RECEPTOR NGFI-B) |
| reference | Sigler et al. Nat.Struct.Biol. 6 471 1999 |
| source | Rattus norvegicus |
| experiment | X-ray (resolution=2.70, R-factor=?) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Zinc finger, C4 type two domains; |
| multimeric complexes | 6l6l_AB 6l6q_AB 6lc1_AD |
| reference complex | 6l6q_B |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | CEKKRRR |
Estimated binding specificities ?
| contact |  |
A | 96 67 24 96 0 0 11 11 96 C | 0 9 24 0 0 0 9 67 0 G | 0 11 24 0 96 96 9 9 0 T | 0 9 24 0 0 0 67 9 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: NGFI-B | ||
| AGGTCA | PubMed | 1cit_A(1.19e-08) |
| AAAGGTCA | PubMed | 1cit_A(2.06e-09) |
| CAAGGTCA | PubMed | 1cit_A(4.87e-06) |
| CCAAGGTCA | PubMed | 1cit_A(2.40e-05) |
| NNAGGTCA | PubMed | 1cit_A(4.87e-06) |
Dendrogram of similar interfaces ?
matrix format--CA--EC--KG--KGRG----RT--RA-- L +6l6q_B +-------14 ------EA--KG--RTRG------------ L ! +1kb2_B +-----25 ST----EC--KG--KGRG------------ L ! ! +6fbq_A ! +---------3 ------EC--KG--KGRG------------ L ! +3e00_A ! ------EC--KG--RGRG----KA------ L ! +2nll_B ! +--11 ------EA--KG--RTRTRT---------- ! ! ! +4umm_E ! ! +-1 ------EA--KG--RTRTRT---------- ! +--19 +2han_B ! ! ! ------EC--KG--KGRG------------ L -27 ! ! +1r0n_A ! ! +---2 ------DA--KG--RGRG------------ L ! +---23 +4iqr_B ! ! ! ----HGECAGKGAAKGRT------RT--RC L ! ! ! +1lo1_A ! ! ! +---15 ------EC--KG--KGRA--RT-------- L ! ! ! ! +5l0m_A ! ! +-21 ------EC--KG--KGRG------------ L ! ! ! +1ynw_B ! ! +-----5 ------EC--KG--RGRG------------ L ! ! +5uan_B +--26 ------EC--KG--KGRG--RC-------- L ! +------2ff0_A ! ! ------DG--KG--RTRG------------ L ! +-22 +3cbb_A ! ! ! +-12 ----HC----KGVT--RG------------ ! ! +--18 +3g9m_B ! ! ! ------EC--KG--KTRG------------ L ! ! +--2nll_A ! ! ----HAEC--KG--RGRG------------ L ! ! +1a6y_A +---24 +-6 ----------KGVT--RG------------ L ! +---16 +1glu_A ! ! ! ----------KGVT--RG------------ L ! ! +5cbz_E ! ! ----------KGVT--RG------------ L ! ! +2c7a_B +-20 +-10 ----------KAVA--RA------------ L ! ! ! +5e69_A ! +-13 +-4 ----------KGVG--RG------------ L ! ! ! +5cbx_B ! ! ! ------EC--KG--RGRG------------ L ! ! +3dzy_D +--17 ------ET--KGAT--RG------------ L ! +1lat_A ! +-8 ------EC--KG--KGRG------------ L ! ! +4nqa_H +-9 ----------KGVT--RG------------ ! +5emc_A +-7 ----------KAVG--RG------------ +5va7_A |
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updated Thu Sep 12 14:35:02 2024