1mnm_C : 3D-footprint complex

structure name	YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE (PROTEIN MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR)
reference	Richmond et al.
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.25, R-factor=0.240)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	1mnm_ABCD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnm_C interface=20,23,66,69,70,73, glvfnvvtqdminkstkpyRghRftkenvrileswfaknienpyldtkglenlmkntslsriqikNwvSNrrRkekt
interface signature	RRNSNR

Estimated binding specificities ?

readout + contact

# IC=7.457 IC/col=0.932 n_of_columns=8

specificity:

A |  41   0  24   0  74   0  96  82
C |  24   1   0   0   0  96   0   4
G |  18   4   4   0   0   0   0   6
T |  13  91  68  96  22   0   0   4

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------NCICNARGRG   L     +-----------------------------4xrm_B    
                         +-3 
  RART--VTKGNA--KA   L   ! +-----------------------------2lkx_A    
                       --4 
  --RTQTVAQTNA----   L   !                            +8osb_E    
                         !            +---------------1 
  --RT--IAQCNAMG--   L   +------------2               +1b72_A    
                                      ! 
  --RC--IAQCNAYC--   L                +----------------3rkq_B

home
updated Fri Sep 13 15:50:20 2024