interface graph thumbnail
legend  pdf

structure nameGUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
(DNA POLYMERASE I)
referenceJohnson et al.
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.90, R-factor=0.221)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTYRNNYQH

Estimated binding specificities ?

readout + contactlogo
# IC=2.753 IC/col=0.688 n_of_columns=4 specificity:   
A |   0   9  69   9
C |   0  69   9   9
G |  96   9   9   9
T |   0   9   9  69
scan!

home
updated Sat Aug 2 01:19:09 2025