interface graph thumbnail
legend  pdf

structure nameA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE- THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
(DNA POLYMERASE I)
referenceJohnson et al.
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.90, R-factor=0.222)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTYRNNRYQH

Estimated binding specificities ?

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# IC=4.250 IC/col=0.850 n_of_columns=5 specificity:   
A |   0   0  12   0  12
C |  96   0  12   0  60
G |   0  96  12  84  12
T |   0   0  60  12  12
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updated Thu Sep 12 15:01:34 2024