| structure name | CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT (PROTEIN YY1 ZINC FINGER DOMAIN) |
| reference | Houbaviy et al. Proc.Natl.Acad.Sci.USA 93 13577 1996 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.50, R-factor=0.212) |
| structural superfamily | C2H2 and C2HC zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KESKRLFNQTN |
Estimated binding specificities ?
| readout + contact |  |
A | 8 87 96 96 96 0 0 0 21 0 74 74 C | 59 8 0 0 0 0 0 0 4 0 8 14 G | 8 0 0 0 0 0 96 96 8 96 10 4 T | 21 1 0 0 0 96 0 0 63 0 4 4scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: YY1 | ||
| GCCATTTT | PubMed | 1ubd_C(2.23e-08) |
| AACTTCAAAATGGCTCC | PubMed | 1ubd_C(1.10e-06) |
| GACATNTT | PubMed | 1ubd_C(4.56e-03) |
| CCATNTT | PubMed | 1ubd_C(2.45e-06) |
Dendrogram of similar interfaces ?
matrix format--------KT--EC--SCKGRGLT--FCNA------QA--TTNA------ L +1ubd_C +----------------1 KT--STHT----RG--DAQARGRGSTDCHG--TT--RG--DAEG--RG-- L +----4 +6b0o_A ! ! ------KGRG----TCYCKARGQA----TC------RA--SCDC--VT-- ! +-----------------5yeg_A +-5 ------------QA--TCNA--QAHTTT----QA--TTLAHGTCDTRG-- L ! ! +1g2d_F ! ! +--------------2 ----------NGKT----KG------HTHG--RGTGTT--ACNA--KGRG L --6 +------3 +1tf3_A ! ! RGSTDAHARG--RGSTDCHGTTRG--DAEG--RG---------------- L ! +---------------5kl3_A ! ----------RGST--YGYC--QC--TGSTRGYT---------------- +------------------------4is1_C |
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updated Fri Sep 13 16:05:47 2024