| structure name | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) (TATA BOX ZINC FINGER PROTEIN) |
| reference | Elrod-Erickson et al. |
| source | Mus musculus |
| experiment | X-ray (resolution=2.20, R-factor=?) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| reference complex | 1g2f_F |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | QTNQHTQTLHTDR |
Estimated binding specificities ?
| readout + contact |  |
A | 16 0 0 0 0 80 0 96 0 0 0 C | 16 0 0 16 0 0 0 0 0 96 0 G | 16 0 0 0 0 0 0 0 96 0 96 T | 48 96 96 80 96 16 96 0 0 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: FINGER | ||
| TAAAAA | PubMed | 1g2d_F(4.86e-05) |
| AATAAA | PubMed | 1g2d_F(4.40e-04) |
| AAAAA | PubMed | 1g2d_F(2.93e-03) |
| term: TATA | ||
| TATAAA | PubMed | 1g2d_F(3.63e-07) |
| TATAAAAG | PubMed | 1g2d_F(1.26e-07) |
| TATAAAA | PubMed | 1g2d_F(4.60e-09) |
| TATAA | PubMed | 1g2d_F(5.30e-05) |
| TTTATA | PubMed | 1g2d_F(3.63e-07) |
| TGTAAA | PubMed | 1g2d_F(2.74e-03) |
| TATATAA | PubMed | 1g2d_F(1.51e-04) |
| CATAAAA | PubMed | 1g2d_F(1.12e-05) |
| CATAAA | PubMed | 1g2d_F(4.40e-04) |
| TCACTATATATAG | PubMed | 1g2d_F(3.33e-03) |
| TATAAG | PubMed | 1g2d_F(4.47e-04) |
| ATATAA | PubMed | 1g2d_F(4.47e-04) |
| TATATA | PubMed | 1g2d_F(4.02e-03) |
| AATAAAAG | PubMed | 1g2d_F(9.66e-05) |
| TATAAGC | PubMed | 1g2d_F(3.20e-03) |
| TATAAGAG | PubMed | 1g2d_F(5.58e-04) |
| TATAAAT | PubMed | 1g2d_F(1.14e-05) |
| CTATAAAAG | PubMed | 1g2d_F(8.05e-10) |
| CATATAA | PubMed | 1g2d_F(3.20e-03) |
| TTATATA | PubMed | 1g2d_F(1.51e-04) |
| CGTATAAC | PubMed | 1g2d_F(1.10e-02) |
| TACAAAAG | PubMed | 1g2d_F(6.48e-04) |
| CTTTT | PubMed | 1g2d_F(8.27e-03) |
| TAAAA | PubMed | 1g2d_F(5.20e-05) |
| TAAAAGC | PubMed | 1g2d_F(3.17e-03) |
| TATAAT | PubMed | 1g2d_F(4.47e-04) |
| TATAGATA | PubMed | 1g2d_F(6.24e-03) |
| TATAAACG | PubMed | 1g2d_F(9.81e-05) |
| TAAAAGT | PubMed | 1g2d_F(3.17e-03) |
| CATAAAAC | PubMed | 1g2d_F(9.66e-05) |
| TATCAA | PubMed | 1g2d_F(2.48e-03) |
| TCTTAT | PubMed | 1g2d_F(2.57e-03) |
| TATAAGT | PubMed | 1g2d_F(3.20e-03) |
| site | source | matches (E-value) |
Dendrogram of similar interfaces ?
matrix format----KT--STHT----RG--DAQARG--RGSTDCHG--TT-- L +-----------------------------6b0o_A ! ----QA--TCNA----QAHTTT--QA--TTLAHGTCDTRG-- L ! +1g2d_F ! +----2 ----RA----NC------ATSGDCKG--DCPTSGSARTKG-- L ! +-------4 +2gli_A ! ! ! --NGKT--WTKG--------HTHGRGTGTT--ACNA--KGRG L ! +-5 +-----1tf3_A ! ! ! ----RGSTDAHARG--RGSTDCHGTT--RG--DAEG--RG-- L ! +--------7 +-------------5kl3_A ! ! ! ----EC--SCKGRG--LT--FCNA----QA--TTNA------ L ! ! ! +----1ubd_C ! ! +----------3 ----EC--SCKGRG----TCYCKARG--QA----TC------ ! ! +----5yeg_A ! +-10 ----VT----NARG------ETTG----YG--ST-------- ! ! ! +----------------6e94_A -17 ! ! +-8 FA--RGSGSCTCTAHCQA--STDCKT--QASGSANAIGTT-- L ! ! ! ! ! +2kmk_A ! ! ! ! +----------------1 ----EC--SGKGRG--DG--YCKGRG--QA----TC------ L ! +-11 +-----9 +5k5h_A ! ! ! ! ----DA--SCHGRGRGDC--SCNA----NCKTSAHG--RG-- L ! ! ! ! +--------------5ei9_F ! ! ! +---6 --------------RGST--YGYC----QC--TGSTRGYT-- ! +-12 ! +--------------4is1_C ! ! ! ! ----KG--WTKA--------HCHGRG--TA--ACNA--KGRG L ! ! ! +--------------------------1tf6_A ! +-13 ! ----RGSTDTEGRG--RGSGDCHGTT--RG--DAEG--RG-- L ! ! ! +---------------------------4x9j_A ! +-14 ! --ITST--STHTRG--RG----EARA----TTTGEC--RG-- L ! ! ! +---------------------------5v3j_F ! +-15 ! ----EC--SCKGRG----TCYCKARGTCQAST--TC------ L ! ! ! +---------------------------5yef_B +-16 ! --RGDC--SCHG----DC--SANA----WC--SCVG--RG-- L ! +---------------------------5v3g_A ! ----------YG----WT--WTSTET--FTVASGDCSART-- L +---------------------------6a57_A |
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updated Thu Sep 12 14:40:51 2024