| structure name | RECBCD:DNA COMPLEX (EXODEOXYRIBONUCLEASE V BETA CHAIN) |
| reference | C Kowalczykowski et al. Nature 432 187 2004 |
| source | ESCHERICHIA COLI |
| experiment | X-ray (resolution=3.10, R-factor=0.242) |
| structural superfamily | P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;?; |
| sequence family | UvrD/REP helicase; |
| multimeric complexes | 1w36_BC 1w36_EF 3k70_BCD 3k70_EFG 5ld2_BCD 6sjb_BCD 6sje_BCD 6sjf_BCD 6sjg_BCD 6t2u_BCD 6t2v_BCD 7mr3_BC 7mr4_BC 8b1t_BCD 8b1u_BCD |
| redundant complexes | 6sjg 3k70 7mr3 7mr4 6sjb 6sje 6sjf 6t2u 6t2v 5ld2 |
| reference complex | 6sjf_B |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format----HT------FTWTRTRT----HT--------ET---------------------------------- +3pjr_A +----------6 FT--HT------FTFTRTRT--ACHT------ET------------------------------------ +----14 +4c2t_B ! ! FGRTHG------FTWTRGRT-------------------------------------------------- L ! +-----------6ppr_B +----17 ----HTDTKTRTFTWTRTRT----HT--STST-------------------------------------- L ! ! +--------1uaa_B ! +-------13 ----HT------FTFTRTRTNTATHT------ET------ET---------------------------- +----20 ! +-4c2u_D ! ! +------9 FT--HT------FTWGRTRT----HG----------RTEGEG---------------------------- ! ! +-2is6_B ! ! ------------------------HTKT------------------------------------------ ! +-----------------------2pjr_B ! ----------------------------------------------RT----------IAQTNA------ L ! +5lux_K ! +-----------------8 ----------------------------------------------RT----------VAQTNA------ L ! ! +3lnq_A ! ! ------------------------------------------------RT----RT--IAQCNA------ L ! ! +5jlw_D ! +----18 +-------3 ----------------------------------------------------------VAQTNA------ L ! ! ! ! +5hod_A ! ! ! +-------12 ----------------------------------------------RA------------IA--NA---- ! ! ! ! ! +4xrs_G ! ! ! ! +-------4 --------------------------------------------RC--RT--------ITQCNAACRG-- L ! ! +-16 +6a8r_A +-24 ! ! ------------------------------------------------RC--------IAQCNAYC---- L ! ! ! ! +---3rkq_B ! ! ! +-----------10 --------------------------------------------------------RTVAITNAMCRG-- L ! ! +-21 +---1yrn_A ! ! ! ! --------------------------------------------------RT------NCSTNARG---- L ! ! ! ! +1mnm_C ! ! ! ! +-------2 ----------------------------------------------RT--------KTIAQCNA----RT L ! ! ! ! ! +1ig7_A ! ! ! ! +---------11 ------------------------------------------------------------KGNA------ L ! ! ! ! ! ! +2hos_A ! ! ! ! ! +------5 ----------------------------------------------RT----------IAKGNA------ L ! ! ! ! ! +2hdd_A -25 ! +-22 +----19 ----------------------------------------------------RA--KAITQTNAMC---- L ! ! ! ! ! +1ahd_P ! ! ! ! ! +--------------1 ----------------------------------------------RA----------ITQTNAMG---- L ! ! ! ! ! ! +5zjt_E ! ! ! ! +--15 ----------------------------------------------YART--------VTQTNAMTKTRT L ! +-23 ! ! +1jgg_B ! ! ! +-------------7 ----------------------------------------------------------IA--NA------ ! ! ! +4qtr_D ! ! ! --------------------------------------------------------RTVAIANAMCRG-- L ! ! +---------------------------1le8_A ! ! ------------------------------------------------RT------QTVAQTNA------ L ! +----------------------------3a01_F ! ------------------------------------------RA--------------ITQCNAMC---- L +-----------------------------1b8i_A |
home
updated Thu Sep 12 15:38:27 2024