| structure name | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION (PROTEIN TRAMTRACK DNA-BINDING DOMAIN) |
| reference | Schwabe et al. |
| source | Drosophila melanogaster |
| experiment | X-ray (resolution=2.80, R-factor=0.193) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HISNCRRDN |
Estimated binding specificities ?
| readout + contact |  |
A | 96 0 0 96 9 67 69 C | 0 0 0 0 11 9 9 G | 0 96 96 0 9 9 9 T | 0 0 0 0 67 11 9scan! |
Dendrogram of similar interfaces ?
matrix format--QA----TC----RA--SCDC--VT-- +-----------------------------5yeg_A +-1 ------HTHGRGTGTT--ACNA--KGRG L +-2 +-----------------------------1tf3_A ! ! --EC--SCKGRG--LT--FCNA------ L +-3 +-----------------------------1ubd_C ! ! --RGSTDCHGTT--RG--DAEG--RG-- L +-4 +-----------------------------6b0o_A ! ! --QAHTTT--QA--TTLAHGTCDTRG-- L +-5 +-----------------------------1g2d_F ! ! RGST--YGYC----QC--TGSTRGYT-- --6 +-----------------------------4is1_C ! --RGSTDCHGTT--RG--DAEG--RG-- L +-----------------------------5kl3_A |
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updated Tue Dec 17 22:40:08 2024