2ff0_A : 3D-footprint complex

structure name	SOLUTION STRUCTURE OF STEROIDOGENIC FACTOR 1 DNA BINDING DOMAIN BOUND TO ITS TARGET SEQUENCE IN THE INHIBIN ALPHA-SUBUNIT PROMOTER (STEROIDOGENIC FACTOR 1)
source	MUS MUSCULUS
experiment	NMR
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ff0_A interface=22,25,29,30,80,83, delcpvcgdkvsgyhyglltcEscKgffKRtvqnnkhytctesqsckidktqrkrcpfcrfqkcltvgmrleavradrmRggRnkfgpmykrdralkqqkka
interface signature	EKKRRR

Estimated binding specificities ?

contact

# IC=9.580 IC/col=1.064 n_of_columns=9

specificity:

A |   0   0  12   0   0   0  12   0  96
C |   0   0  12  96  96  96  12   0   0
G |   0  84  60   0   0   0  12  96   0
T |  96  12  12   0   0   0  60   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ECKG--KGRGRCRC   L                  +-------2ff0_A    
                           +----------1 
  --KGVT--RG----       +---2          +-------5emp_A    
                       !   ! 
  ECKG--KGRG----     --3   +------------------3dzy_A    
                       ! 
  ECKG--RGRG----   L   +----------------------3dzy_D

home
updated Tue Dec 17 22:42:29 2024