| structure name | T:O6-METHYL-GUANINE IN THE POLYMERASE-2 BASEPAIR POSITION (DNA Polymerase I) |
| reference | Forsberg et al. Proc.Natl.Acad.Sci.Usa 103 19701 2006 |
| source | Geobacillus stearothermophilus |
| experiment | X-ray (resolution=1.55, R-factor=?) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; |
| multimeric complexes | 8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD |
| redundant complexes | 3ht3 1u48 1nk8 1l3u 1nk6 1l3s 1ua1 1u47 3hp6 1lv5 3ez5 2hw3 1nk0 1nk7 3bdp 1nk5 1nk9 2hhw 2xo7 1u4b 1nkb 2hvi 1l3v 1l5u 1njx 1l3t 1njy 1ua0 2bdp 2xy6 2hht 1nke 1njw 2hhx 2hvh 2xy7 1nk4 2hhu 2y1i 2xy5 2y1j 1njz 3hpo 2hhs 1nkc 1xc9 1u45 1u49 4bdp 3eyz 2hhq |
| reference complex | 4yfu_D |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format------------------------DTKT------KC--------RG--NTRGAAFA--YCIA--LAQTNANT------------QC---- L +-2hhv_A +-1 LCNGKGYGMG--RCFCEC----EG--------------SGHGVC---------------------------------------------- +----2 +-1kln_A ! ! ----------------------------------KC--------RGNGNG--TGFG--YGMGSA--------------------QG--HG L +-------------3 +---3py8_A ! ! ------------------------------------KT------RTNG----------YA------------------------QA---- +----4 +--------1x9m_A ! ! ----------------------------YTDGKG----------------------TTYT--FA----------------------HT-- +-6 +----------------------1msw_D ! ! ----------DA--------FA-------------------------------------------------------------------- ! ! +--------------------------3nci_A --7 +-5 TT----------------HT---------------------------------------------------------------------- ! +--------------------------2py5_B ! ------------------------------------------------------------------------KGTGKANGYAST------ L +----------------------------1zlk_A |
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updated Thu Sep 12 16:09:43 2024