interface graph thumbnail
legend  pdf

structure nameDDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
(DNA Polymerase I)
referenceForsberg et al. Proc.Natl.Acad.Sci.Usa 103 19701 2006
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.88, R-factor=?)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRNNRQH

Estimated binding specificities ?

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# IC=3.165 IC/col=0.791 n_of_columns=4 specificity:   
A |   0  48   0  24
C |   0  24   0  12
G |  96  24  96  12
T |   0   0   0  48
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updated Thu Sep 12 16:09:55 2024