interface graph thumbnail
legend  pdf

structure nameDDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
(DNA Polymerase I)
referenceForsberg et al. Proc.Natl.Acad.Sci.Usa 103 19701 2006
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.88, R-factor=?)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKRNNRQH

Estimated binding specificities ?

readout + contactlogo
# IC=2.812 IC/col=0.703 n_of_columns=4 specificity:   
A |   0  33   0  21
C |   0  21   0  21
G |  96  21  96  10
T |   0  21   0  44
scan!

home
updated Sat Aug 2 02:39:33 2025