2kdz_A : 3D-footprint complex

structure name	STRUCTURE OF THE R2R3 DNA BINDING DOMAIN OF MYB1 PROTEIN FROM PROTOZOAN PARASITE TRICHOMONAS VAGINALIS IN COMPLEX WITH MRE-1/MRE- 2R DNA (MYB24)
source	TRICHOMONAS VAGINALIS
experiment	NMR
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2kdz_A interface=35,37,38,41,88,92, kvkfteeedlklqqlvmrygakdwirisqlmitrNpRQcrErwnnyinpalrtdpwspeedmlldqkyaeygpkwnkiskflknrsdNnirNrwmmiarhrakhqks
interface signature	NRQENN

Estimated binding specificities ?

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# IC=4.529 IC/col=0.647 n_of_columns=7

specificity:

A |  56  60   0   0  90  21  55
C |   9   7  95   0   2  21  11
G |  20  23   1  95   2  21  12
T |  11   6   0   1   2  33  18

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Dendrogram of similar interfaces ?

matrix format

  
  --KTRCEC--NA--------DCNA--KANAHTNTSCTC   L             +-----------------------------1msf_C    
                                                       +-1 
  --KGRTEC--------------NA--KGNA--NTST--             +-2 +-----------------------------1h89_C    
                                                     ! ! 
  --------------RT----RCET----SA--QAKT--   L       +-3 +-----------------------------6qec_A    
                                                   ! ! 
  --------------RG--HCRGRGQAQGKG--------   L     +-4 +-----------------------------2glo_A    
                                                 ! ! 
  ------------RT--HGSGRGHG--RT----------   L   +-5 +-----------------------------1tc3_C    
                                               ! ! 
  --------------RT------------VA--QTNA--   L --6 +-----------------------------5hod_A    
                                               ! 
  STVCKGDCRG----------------------------   L   +-----------------------------1w0t_A

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updated Sun Aug 3 06:21:24 2025