| structure name | GFI-1 ZINC FINGERS 3-5 COMPLEXED WITH DNA (ZINC FINGER PROTEIN GFI-1) |
| source | RATTUS NORVEGICUS |
| experiment | NMR |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | FRSSTHQSDKQSSNT |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 8 96 8 0 0 96 0 56 C | 0 0 64 0 8 0 0 0 0 16 G | 96 96 8 0 8 0 96 0 0 16 T | 0 0 16 0 72 96 0 0 96 8scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GFI-1 | ||
| CCAAT | PubMed | 2kmk_A(4.12e-03) |
Dendrogram of similar interfaces ?
matrix format----TTTGECRG--RG--ET----RGSCEC--RG-- L +-----------------------------5v3j_F ! ------SA--MT--VT--NARG----ETTG------ ! +--6e94_A ! +---------------1 --EC--SGKGRG--DGYCKGRG--QA--TC------ L ! +---2 +--5k5h_A ! ! ! --KG--WTKA------HCHGRG--TAACNA--KGRG L --7 +--3 +------------------1tf6_A ! ! ! NGKT--WTKG------HTHGRGTGTTACNA--KGRG L ! +-4 +----------------------1tf3_A ! ! ! ------------RGSTYGYC----QCTGSTRGYT-- ! +-5 +-------------------------4is1_C ! ! ! --------------QA--TCRG--RGYCRT------ L +-6 +--------------------------7txc_E ! QT--AG--KGRG--RGDCKG---------------- L +---------------------------7n5w_A |
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updated Fri Sep 13 16:28:25 2024