interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN ORIGIN BINDING DOMAIN WITH DNA
(large T antigen)
referenceBullock et al. 'Plos 5 e23 2007
sourceSimian virus 40
experimentX-ray (resolution=2.40, R-factor=0.209)
structural superfamilyOrigin of replication-binding domain, RBD-like;
sequence familyOrigin of replication binding protein;
multimeric complexes2itl_AB 2ntc_AB 4fgn_AB 5d9i_AB
reference complex2itl_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSNRTR

Estimated binding specificities ?

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# IC=6.407 IC/col=0.915 n_of_columns=7 specificity:   
A |   8   0   0   0   8   8   8
C |   0   0  96  96   8  72   8
G |  80  96   0   0   8   8   8
T |   8   0   0   0  72   8  72
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updated Mon Dec 16 19:50:33 2024