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legend  pdf

structure nameSTRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
(CELL DIVISION CONTROL PROTEIN 6 HOMOLOG)
referenceSchuwirth et al. Science 317 1213 2007
sourceAEROPYRUM PERNIX
experimentX-ray (resolution=3.10, R-factor=0.257)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;
sequence familyCDC6, C terminal;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTTRRSRK

Estimated binding specificities ?

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# IC=8.645 IC/col=0.540 n_of_columns=16 specificity:   
A |   1   5   7  79  24   5   0   0  79  24  24  24  24  24  24   0
C |   5  79  79   5  24   5   0   0   7  24  24  24  24  24  24   0
G |   0   7   5   5  24   7  96  96   5  24  24  24  24  24  24  96
T |  90   5   5   7  24  79   0   0   5  24  24  24  24  24  24   0
scan!

Dendrogram of similar interfaces ?

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updated Sun Aug  3 06:33:27 2025