2v1u_A : 3D-footprint complex

structure name	STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA (CELL DIVISION CONTROL PROTEIN 6 HOMOLOG)
reference	Schuwirth et al. Science 317 1213 2007
source	AEROPYRUM PERNIX
experiment	X-ray (resolution=3.10, R-factor=0.257)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	CDC6, C terminal;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2v1u_A interface=110,326,328,329,349,352,355, leskifrkrwvllpdyvpdvlphreaelrrlaevlapalrgekpsnallygltgtgktavarlvlrrlearasslgvlvkpiyvnarhretpyrvasaiaeavgvrvpfTglsvgevyerlvkrlsrlrgiyiivldeidflpkrpggqdllyritrinqelvslvgitnslgfvenleprvksslgevelvfppytapqlrdiletraeeafnpgvldpdvvplcaalaarehgdarraldllrvageiaerrreervrrehvysaraeierdrvsevvrtlplhaklvllsimmledggrpastgeiyerykeltstlglehvTlRRvsgiiseldmlgivksrvvSrgRygKtrevsldadrlavenalsedpfvarll
interface signature	TTRRSRK

Estimated binding specificities ?

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# IC=11.176 IC/col=0.699 n_of_columns=16

specificity:

A |   0  24  24  24   5  17  24  10   0   0  96  24   5   0   0  91
C |  96  24  24  24  16  16  24  12  96  96   0  24   0   0   0   0
G |   0  24  24  24  65   5  24  10   0   0   0  24   6  96  96   5
T |   0  24  24  24  10  58  24  64   0   0   0  24  85   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Sep 13 16:41:34 2024