| structure name | CRYSTAL STRUCTURE OF AN ALKA HOST/GUEST COMPLEX 8OXOGUANINE:CYTOSINE BASE PAIR (DNA-3-methyladenine glycosylase 2) |
| reference | Verdine et al. Structure 16 1166 2008 |
| source | Escherichia coli |
| experiment | X-ray (resolution=2.30, R-factor=?) |
| structural superfamily | DNA-glycosylase;TATA-box binding protein-like; |
| sequence family | AlkA Nterminal domain; HhHGPD superfamily base excision DNA repair; |
| multimeric complexes | 3cvs_AB 3cvs_CD 3cvt_AB 3cvt_CD 3cw7_AB 3cw7_CD 3cwa_AB 3cwa_CD 3cws_AB 3cws_CD 3cwt_AB 3cwt_CD 3cwu_AB 3cwu_CD 3d4v_AB 3d4v_CD |
| redundant complexes | 1diz_B 3cvs_A 3cvt_A 3cwa_A 3cws_A 3cwt_D 3cwu_D 3d4v_A 3ogd_A 3oh6_A 3oh9_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--LG----------KG-- +------------3cw7_C +----------3 --QTLAHGAT------KT ! +------------3s6i_A ! QGKGLGSGAG--SCLTKC +-5 +--------4b21_A ! ! +-----------2 --QG--QG----YC---- L ! ! ! +--------7ef9_A ! +--4 NGRGTG----LG--LC-- --6 ! +6vjw_A ! +--------------------1 NGRGTG----LG--LCRG ! +7kz0_A ! --QG--RG----YC---- +------------------------6u7t_A |
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updated Fri Sep 13 16:58:04 2024