| structure name | CRYSTAL STRUCTURE OF WT HMBD4 COMPLEXED WITH T:G MISMATCH DNA (Methyl-CpG-binding domain protein 4) |
| reference | Jung et al. Biochem.J. 477 1601 2020 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.02, R-factor=?) |
| structural superfamily | DNA-glycosylase; |
| redundant complexes | 4evv 4ew0 4ew4 |
| reference complex | 4ofa_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatLTVTQTLTNGRGTG------LC--LCRG--------------YTNT--KT +4ofa_A +----------1 --------NGRGTG------LG--LCRG---------------------- ! +7kz0_A +-------7 --------NGRGTG------LG--LCRG---------------------- ! ! +------4e9f_A +-----12 +---5 ----------QTLAHGAT--------KT---------------------- ! ! +------3s6i_A ! ! --------------------YG---------------------------- ! +------------------5kn8_A +-16 ----------QGCGTA----LC---------------------------- ! ! +-------1orn_A ! ! +----6 ----------NG--RG------FGRC------------------------ ! +------------8 +-------4ejy_A ! ! --------AGNG------RCFC----RG------------------RA-- ! +------------3knt_A ! --------HTRT------------------NCSTNARG------------ L +-17 +-1k61_B ! ! +-------------3 ----------------------------KTIAQCNA----RT-------- L ! ! +--------10 +-1ig7_A ! ! ! ! ------------------------------ITQTNAMG------------ L ! ! ! +---------------5zjt_E ! ! ! ------------------------------VAQTNA-------------- L ! ! ! +-------------------5hod_A ! ! ! ! ------------------------------IA--NA-------------- ! +-15 ! +4qtr_D ! ! +-13 +--------------2 ----------RT------------------NCSTNARG------------ L +-18 ! ! ! +-9 +1mnm_C ! ! ! ! ! ! ! ------------------------------NCICNARGRG---------- L ! ! ! ! +-11 +---------------6fqp_B ! ! +---14 ! ------------------------------IAQCNAYC------------ L ! ! ! ! +---3rkq_B ! ! ! +------------4 ----------------------------RTVAITNAMCRG---------- L -19 ! ! +---1yrn_A ! ! ! ------------------------------VASGNA-------------- L ! ! +--------------------3cmy_A ! ! ------------------------------VTQTNAMTKTRT-------- L ! +-----------------------------1jgg_B ! ------------------------------IA--NA-------------- +-----------------------------4xrs_G |
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updated Mon Dec 18 18:38:47 2023