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structure nameHUMAN MBD4 GLYCOSYLASE DOMAIN BOUND TO DNA CONTAINING SUBSTRATE ANALOG 2'-DEOXY-PSEUDOURIDINE
(Methyl-CpG-binding domain protein 4)
referencePozharski et al. J.Mol.Biol. 433 167097 2021
sourceHomo sapiens
experimentX-ray (resolution=1.57, R-factor=0.190)
structural superfamilyDNA-glycosylase;
redundant complexes4dk9 7kz1 7kzg
reference complex4ofa_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --------NGRGTG----LG--LCRG------------------                                        +7kz0_A    
                                                                             +--------1 
  LTVTQTLTNGRGTG----LC--LCRG------------YTNTKT                               !        +4ofa_A    
                                                                       +-----4 
  ----------QG--QG--YC------------------------   L                     !     !   +----7ef9_A    
                                                                       !     +---2 
  ----------QG--RG--YC------------------------                  +------5         +----6u7t_A    
                                                                !      ! 
  --------NGRGTG----LG--LCRG------------------                  !      !       +------4e9f_A    
                                                             +--6      +-------3 
  ----------QTLAHGAT------KT------------------               !  !              +------3s6i_A    
                                                         +---7  ! 
  ----------NCNANARC--YGRC--------------------           !   !  +---------------------2xhi_A    
                                                       +-8   ! 
  --------------------------RTVAITNAMCRG------   L     ! !   +------------------------1yrn_A    
                                                     +-9 ! 
  --------HTRT----------------NCSTNARG--------   L   ! ! +----------------------------1k61_B    
                                                   -10 ! 
  --------RA------------------ITQCNAMC--------   L   ! +----------------------------1b8i_A    
                                                     !  
  --------------------------RTVAIANAMCRG------   L   +----------------------------1le8_A    
                                                   

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updated Fri Sep 13 04:31:49 2024