| structure name | THE STRUCTURE OF PROTOZOAN PARASITE TRICHOMONAS VAGINALIS MYB2 IN COMPLEX WITH MRE-1-12 DNA (MYB21) |
| reference | Amiraslanov et al. 'Nucleic 39 8992 2011 |
| source | TRICHOMONAS VAGINALIS |
| experiment | X-ray (resolution=2.00, R-factor=0.193) |
| structural superfamily | Homeodomain-like; |
| sequence family | Myblike DNAbinding domain; |
| redundant complexes |  3osf_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KRRDYIKNV |
Estimated binding specificities ?
| readout + contact |  |
A | 44 1 0 88 0 67 C | 10 91 0 2 1 10 G | 32 2 95 4 0 9 T | 10 2 1 2 95 10scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: MYB2 | ||
| GACGAT | PubMed | 3osg_A(1.12e-03), 3osf_A(6.34e-03) |
Dendrogram of similar interfaces ?
matrix formatKTRCECNA--------DCNA--KANAHTNTSCTC L +-----------------------------1msf_C +-1 KGRTEC------------NA--KGNA--NTST-- +-2 +-----------------------------1h89_C ! ! ----------RT----RCET----SA--QAKT-- L +-3 +-----------------------------6qec_A ! ! ----------RT----STVC--KGDC--RG---- L +-4 +-----------------------------1w0t_A ! ! --------RT--HGSGRGHG--RT---------- L --5 +-----------------------------1tc3_C ! ----------RG--HCRGRGQAQG---------- L +-----------------------------2glo_A |
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updated Fri Sep 13 17:32:42 2024