3pv8_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDTTP-DA IN CLOSED CONFORMATION (DNA polymerase I)
reference	Beese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
source	Geobacillus kaustophilus
experiment	X-ray (resolution=1.52, R-factor=0.186)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A;
multimeric complexes	8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex	4yfu_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3pv8_A interface=285,290,318,325,328,500,532, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstYiegllkvvrpatkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
interface signature	KYRNNQH

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# IC=3.282 IC/col=0.469 n_of_columns=7

A |   6  24  24  96   0   6   6
C |  70  24  24   0  38  25  65
G |  12  24  24   0  58  19   0
T |   8  24  24   0   0  46  25

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updated Thu Jan 8 22:35:32 2026