interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION
(DNA polymerase I)
referenceBeese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
sourceGeobacillus kaustophilus
experimentX-ray (resolution=1.73, R-factor=0.197)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKYRNNQH

Estimated binding specificities ?

readout + contactlogo
# IC=2.466 IC/col=0.617 n_of_columns=4 specificity:   
A |  69   9   8  11
C |  11  87  11  69
G |   8   0   8   8
T |   8   0  69   8
scan!

home
updated Sat Aug 2 04:43:30 2025