interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION
(DNA polymerase I)
referenceBeese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
sourceGeobacillus kaustophilus
experimentX-ray (resolution=1.73, R-factor=0.197)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKYRNNQH

Estimated binding specificities ?

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# IC=2.563 IC/col=0.641 n_of_columns=4 specificity:   
A |  72   8  11   8
C |   8  87   8  72
G |   8   1   8   8
T |   8   0  69   8
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updated Mon Dec 16 21:44:22 2024