3px4_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDCTP-DA MISMATCH (WOBBLE) IN AJAR CONFORMATION (DNA polymerase I)
reference	Beese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
source	Geobacillus kaustophilus
experiment	X-ray (resolution=1.58, R-factor=0.212)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3px4_D interface=285,290,318,325,328,413,417,419,500,532, kmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstYiegllkvvrpatkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnYgivYgIsdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamntpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
interface signature	KYRNNYYIQH

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# IC=2.674 IC/col=0.669 n_of_columns=4

A |   9  67   0   9
C |   9  11   0   9
G |  67   9  96   9
T |  11   9   0  69

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updated Mon Dec 16 21:44:32 2024