interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION
(DNA polymerase I)
referenceBeese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
sourceGeobacillus kaustophilus
experimentX-ray (resolution=1.59, R-factor=0.186)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A;
multimeric complexes8scg_AD 8sci_AD 8scj_AD 8sck_AD 8scl_AD 8scm_AD 8scn_AD 8sco_AD 8scp_AD 8scr_AD 8scs_AD 8sct_AD 8scu_AD
reference complex4yfu_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKYRNNAYYINNQH

Estimated binding specificities ?

readout + contactlogo
# IC=2.760 IC/col=0.690 n_of_columns=4 specificity:   
A |   9  67   0  11
C |   9   0   0   9
G |  67  10  96   9
T |  11  19   0  67
scan!

home
updated Thu Sep 12 17:55:15 2024