3px6_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION (DNA polymerase I)
reference	Beese et al. Proc.Natl.Acad.Sci.USA 108 17644 2011
source	Geobacillus kaustophilus
experiment	X-ray (resolution=1.59, R-factor=0.186)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3px6_D interface=287,292,320,327,330,412,415,419,421,429,498,502,534, lakmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpqfvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakmkqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgKlqstYiegllkvvrpatkkvhtifnqaltqtgRlsstepNlqNipirleegrkirqafvpsesdwlifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakAvnYgivYgIsdyglaqNlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpditsrnfnvrsfaermamNtpiQgsaadiikkamidlnarlkeerlqahlllqvHdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
interface signature	KYRNNAYYINNQH

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# IC=2.850 IC/col=0.712 n_of_columns=4

A |   9  57   0   9
C |   9  21   0   0
G |  69   9  96   9
T |   9   9   0  78

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updated Mon Dec 16 21:44:43 2024