7jvt_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A LAMBDA-186 HYBRID REPRESSOR
reference	Shearwin et al. 'To ? ? ?
experiment	X-ray (resolution=3.16, R-factor=0.234)
structural superfamily	lambda repressor-like DNA-binding domains;
sequence family	Helixturnhelix;
multimeric complexes	7jvt_CD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jvt_D interface=1,31,32,42,43,52,53, KkkpltqeqledarrlkaiyekkknelglsQEsvadkmgmgQSgvgalfngINalnaynaallakilkvsveefspsiareiyemyeavsdakriegftlseeilksdkqlsvdaqfftkpltdgmairsegkiyfvdkqaslsdglwlvdiegaisireltklpgrklhvaggkvpfecgiddiktlgrvvgvysevn
interface signature	KQEQSIN

Estimated binding specificities ?

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# IC=6.526 IC/col=0.932 n_of_columns=7

specificity:

A |  10   9   8   8  69   0  96
C |   8   0   8   0   8   0   0
G |  78  87   8  88   8   0   0
T |   0   0  72   0  11  96   0

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Dendrogram of similar interfaces ?

matrix format

  
  --QTET--QASG------ITNG----   L             +------------------7jvt_D    
                                       +-----1 
  ------TTQAQTSTEAQT--------   L     +-2     +------------------1rpe_R    
                                     ! ! 
  RT--------RG----NT--ETRTYA   L   +-3 +------------------------7f9h_B    
                                   ! ! 
  ------SG--PA--------RC----     --4 +--------------------------7csw_B    
                                   ! 
  --------KGSGTTSTQC--QG----   L   +---------------------------3zhm_A

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updated Wed Dec 18 09:08:26 2024